Joint probability-based neuronal spike train classification

نویسندگان

  • Yan Chen
  • Vitaliy Marchenko
  • Robert F. Rogers
چکیده

Neuronal spike trains are used by the nervous system to encode and transmit information. Euclidean distance-basedmethods (EDBMs) have been applied to quantify the similarity between temporally-discretized spike trains and model responses. In this study, using the same discretization procedure, we developed and applied a joint probability-based method (JPBM) to classify individual spike trains of slowly adapting pulmonary stretch receptors (SARs). The activity of individual SARs was recorded in anaesthetized, paralysed adult male rabbits, which were artificially-ventilated at constant rate and one of three different volumes. Two-thirds of the responses to the 600 stimuli presented at each volume were used to construct three response models (one for each stimulus volume) consisting of a series of time bins, each with spike probabilities. The remaining one-third of the responses where used as test responses to be classified into one of the three model responses. This was done by computing the joint probability of observing the same series of events (spikes or no spikes, dictated by the test response) in a given model and determining which probability of the three was highest. The JPBM generally produced better classification accuracy than the EDBM, and both performed well above chance. Both methods were similarly affected by variations in discretization parameters, response epoch duration, and two different response alignment strategies. Increasing bin widths increased classification accuracy, which also improved with increased observation time, but primarily during periods of increasing lung inflation. Thus, the JPBM is a simple and effective method performing spike train classification.

برای دانلود رایگان متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Déconvolution impulsionnelle par filtre de Hunt et seuillage

A new method of sparse spike train deconvolution is presented. It is based on the coupling of the Hunt filter with a thresholding (to obtain a sparse spike train signal). We show that a good model for the probability density function of the Hunt filter output is a Gaussian mixture, from which we derive the threshold that minimizes the probability of errors. Based on an interpretation of the met...

متن کامل

Spike train clustering using a Lempel-Ziv distance measure

Multi-electrode array recordings reveal complex structures in the firing of spatially distributed neurons. The analysis of this neuronal network activity demands a classification of neurons according to similarities in their firing behavior. If similar spike patterns do not occur synchronously, but have unknown delays within spike trains, this processing step is difficult. To solve this problem...

متن کامل

Spike Train Probability Models for Stimulus-Driven Leaky Integrate-and-Fire Neurons

Mathematical models of neurons are widely used to improve understanding of neuronal spiking behavior. These models can produce artificial spike trains that resemble actual spike train data in important ways, but they are not very easy to apply to the analysis of spike train data. Instead, statistical methods based on point process models of spike trains provide a wide range of data-analytical t...

متن کامل

Innovative Methodology Designing optimal stimuli to control neuronal spike timing

Ahmadian Y, Packer AM, Yuste R, Paninski L. Designing optimal stimuli to control neuronal spike timing. J Neurophysiol 106: 1038–1053, 2011. First published April 20, 2011; doi:10.1152/jn.00427.2010.—Recent advances in experimental stimulation methods have raised the following important computational question: how can we choose a stimulus that will drive a neuron to output a target spike train ...

متن کامل

Neuronal Spike Train Analysis in Likelihood Space

BACKGROUND Conventional methods for spike train analysis are predominantly based on the rate function. Additionally, many experiments have utilized a temporal coding mechanism. Several techniques have been used for analyzing these two sources of information separately, but using both sources in a single framework remains a challenging problem. Here, an innovative technique is proposed for spike...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

عنوان ژورنال:

دوره   شماره 

صفحات  -

تاریخ انتشار 2009